x86_64-unknown-linux-gnuĬhecking target system type. x86_64-unknown-linux-gnuĬhecking host system type. yesĬhecking for gcc option to accept ISO C89. noĬhecking whether we are using the GNU C compiler. yesĬhecking whether we are cross compiling. a.outĬhecking whether the C compiler works. ** package ‘RPostgreSQL’ successfully unpacked and MD5 sums checkedĬhecking for C compiler default output file name. * installing *source* package ‘RPostgreSQL’. * installing to library ‘/home/hpc/pr48co/gu28luf2/r/R-3.2.2/library’ Linux version 3.0.101-0.47.55-default (gcc version 4.3.4 (SUSE Linux) ) #1 SMP Thu May 28 08:25: (dc083ee)ĪPPENDIX: error when trying to install ~/r/R-3.2.2/bin/R CMD INSTALL $PKG This is the linux distribution on the cluster: Maybe the reference should be in pg_config? If yes, how would it look like?

It seems that somewhere a reference to libpq-fe.h is missing, but I do not know how do fix it. I tried to add the include directory to the search path:īut that did not work either. Now, the header '/libpq-fe.h' is in ~/postgresql/include/, but cannot be found during the installation of RPostgreSQL. configure -prefix=/home/hpc/pr48co/gu28luf2/postgresql Therefore I installed postgres in a directory, where I have writing permission: I have installed R-3.2.2 and PostgreSQL-9.4.4 on Linux supercomputing cluster, where I do not have root user rights. I have a problem similar to Martas about one year ago (see copy of terminal output below).

Redhat install postgres